PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 349241
Common NameARALYDRAFT_349241
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARF
Protein Properties Length: 609aa    MW: 68550.6 Da    PI: 5.9861
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
349241genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.7e-23128228198
             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             f+k+lt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv++++L +gD +vF   + +++ l+v+v
  349241 128 FVKILTASDTSTHGGFSVLRKHATEClpaldmtQ--ATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDAFVFL--RGENGDLRVGV 226
             89****************************9543..445569************************************************..3488889***9 PP

             E- CS
      B3  97 fr 98 
             +r
  349241 227 RR 228
             98 PP

2Auxin_resp791.1e-26254344183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsser...........rlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t+++F v+Y+Pr   s+F+v v+k+++a+k+ +s+G+Rf+m+fe+e+s+er           r++Gt+vg+ dl++ +Wp SkWrsL+
      349241 254 ASHAVRTTTIFVVFYKPRI--SQFIVGVNKYMEAIKHGFSLGTRFRMRFEGEESPERivldsetwsvfRFTGTIVGTGDLSS-QWPASKWRSLQ 344
                 689***************8..9********************************99855555544444459********777.*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-40113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-38122243IPR015300DNA-binding pseudobarrel domain
CDDcd100179.87E-20126228No hitNo description
PROSITE profilePS5086312.083128230IPR003340B3 DNA binding domain
SMARTSM010191.3E-20128230IPR003340B3 DNA binding domain
PfamPF023623.2E-21128228IPR003340B3 DNA binding domain
PfamPF065071.8E-24254344IPR010525Auxin response factor
PfamPF023096.5E-8495539IPR033389AUX/IAA domain
SuperFamilySSF542778.5E-13502579No hitNo description
PROSITE profilePS5174525.792503584IPR000270PB1 domain
PfamPF023091.4E-5549591IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MASAEGDDDF GSSSSRFYQD QLYTELWKVC AGPLVEVPRA DERVFYFPQG HMEQLVASTN  60
QGIKSEEIPV FDLPPKILCR VLGITLKAEH ETDEVYAQIT LQPEEDQSEP TSLDPPLVEP  120
TKQMFHSFVK ILTASDTSTH GGFSVLRKHA TECLPALDMT QATPTQELVT RDLHGFEWRF  180
KHIFRGQPRR HLLTTGWSTF VSSKRLVAGD AFVFLRGENG DLRVGVRRLA RHQSTMPTSV  240
ISSQSMHLGV LATASHAVRT TTIFVVFYKP RISQFIVGVN KYMEAIKHGF SLGTRFRMRF  300
EGEESPERIV LDSETWSVFR FTGTIVGTGD LSSQWPASKW RSLQVQWDEP TTVQRPDKVS  360
PWEIEPFLAT SPISTPAQQP QLKCKRSRPT EPSVITPAPP SFLYSLPQSQ DSINASLKLF  420
QDPSLERNSG GYSSNNSFKP ETPPPPPRPT NCSYRLFGFD LTSNPPAPLP QDKQPMDTCG  480
AAKCQEPITP TSMNEQKKQQ TSRSRTKVQM QGIAVGRAVD LTLLKSYDEL IEELEEMFEI  540
QGQLRPRDKW IVVFTDDEGD MMLAGDDPWN EFCKMAKKIF IYSSDEVKKM ATKLKISSSL  600
ENEEYGNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1612037117359Auxin response factor 1
4ldw_A1e-1612037117359Auxin response factor 1
4ldw_B1e-1612037117359Auxin response factor 1
4ldx_A1e-1612037117359Auxin response factor 1
4ldx_B1e-1612037117359Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3347170.0AF334717.1 Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA, complete cds.
GenBankAY0597460.0AY059746.1 Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA, complete cds.
GenBankAY0704630.0AY070463.1 Arabidopsis thaliana AT3g61830/F15G16_220 mRNA, complete cds.
GenBankAY0913920.0AY091392.1 Arabidopsis thaliana putative auxin response factor protein (At3g61830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876640.10.0hypothetical protein ARALYDRAFT_349241
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLD7LSP80.0D7LSP8_ARALL; Auxin response factor
STRINGfgenesh1_pg.C_scaffold_50026330.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74351841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18